Pointing out that there were "variations" in the chargesheets filed by the Maharashtra Anti-Terror Squad and the National Investigation Agency, which later took over the case, the court reasoned that the officer had already spent a long time in jail. The trial is likely to take a long time, the court added.
Lt Col Purohit was accused of floating Abhinav Bharat, a right-wing group that was allegedly involved the twin blasts that killed seven people in Malegaon, a textile town 270 km from Mumbai, on September 29, 2008. A former leader of the Vishwa Hindu Parishad, Sadhvi Pragya Singh Thakur, was arrested that October and Lt Col Purohit in November. Both were charged with plotting the blasts.
Lt Col Purohit is also accused of collecting huge funds and using them to procure arms and explosives and organising meetings, where the Malegaon attack was planned.
The lawyers arguing the case said the previous UPA government is responsible for trying to project the case as a right wing conspiracy. Aparna Purohit, the officer's wife, said "questions of political influences" had "damaged" their case for several years.
Lt Colonel Purohit has all along pleaded that he was assigned by military intelligence to infiltrate various terror organisations and his seniors were kept informed about his actions and associations with Abhinav Bharat. Last year, he had written to then Defence Minister Manohar Parrikar, claiming he had been falsely implicated in the case.
The officer, who was from intelligence corps, and was posted with an unit under Southern Command, had been suspended from service soon after his arrest. The army will review his suspension after examining the court order, news agency Press Trust of India reported, quoting sources.
Get Breaking news, live coverage, and Latest News from India and around the world on NDTV.com. Catch all the Live TV action on NDTV 24x7 and NDTV India. Like us on Facebook or follow us on Twitter and Instagram for latest news and live news updates.